M. J. García-Pereira, H. Quesada, A. Caballero, A. Carvajal-Rodríguez (2012)
AFLPMax: a user-friendly application for computing the optimal number of amplified fragment length polymorphism markers needed in phylogenetic reconstruction
Molecular Ecology Resources. doi: 10.1111/j.1755-0998.2011.03113.x
Carvajal-Rodríguez and de Uña-Alvarez (2011)
Assessing significance in high-throughput experiments by sequential goodness of fit and q-value estimation
PLoS ONE. 6 (9): e24700. [Journal Link]
Carvajal-Rodríguez and de Uña-Alvarez (2011)
A Simulation Study on the Impact of Strong Dependence in High-Dimensional Multiple-Testing I: The Case without Effects
PACBB. Advances in Intelligent and Soft Computing 93: 241-246 [SpringerLink]
AP. Diz, Carvajal-Rodríguez and David O. F. Skibinski (2011)
Multiple hypothesis testing in proteomics: A strategy for experimental work
Molecular & Cellular Proteomics 10: M110.004374 [Online early]
de Uña-Alvarez and Carvajal-Rodríguez (2010)
SGoFicance Trace: Assessing Significance in High Dimensional Testing Problems
PLoS ONE. 5 (12):e15930. doi:10.1371/journal.pone.0015930 [PDF]
Antonio Carvajal-Rodriguez (2010)
Simulation of Genes and Genomes Forward in Time.
Current Genomics 11 (1): 58-61.
Antonio Carvajal-Rodriguez Jacobo de Uña-Alvarez and Emilio Rolan-Alvarez (2009) 
A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests
BMC Bioinformatics 10:209 [PDF]
Antonio Carvajal-Rodriguez and Fernando Carvajal-Rodriguez (2009)
Population Extinction in Genetic Algorithms: Application in Evolutionary Studies
LNCS (IWANN 2009) 5518: 1028-1034
Antonio Carvajal-Rodriguez (2008)
Detecting recombination and diversifying selection in human alpha-papillomavirus
Infection, Genetics and Evolution 8: 689-692 [PDF] (see also Figure 1 corrigendum)
Antonio Carvajal-Rodriguez (2008)
GENOMEPOP: A program to simulate genomes in populations
BMC Bioinformatics 9: 223 [PDF]
Antonio Carvajal-Rodriguez (2008)
Simulation of genomes: A review.
Current Genomics 9 (3): 155-159.
Antonio Carvajal-Rodriguez (2008)
The role of recombination in the post-genomic era: Challenges and Perspectives.
in Genetic Recombination Research Progress pp. 205-227. Ed. Jacob H. Schulz. Nova Science Publishers, Inc. New York.
Antonio Carvajal-Rodríguez, David Posada,
Marcos Pérez-Losada, Emily Keller, Elaine J. Abrams, Raphael P. Viscidi
and Keith A. Crandall
(2008).
Disease progression and evolution of the HIV-1 C2V3C3 env gene region
from 24 infected infants.
Infection, Genetics and Evolution 8: 110-120. doi:10.1016/j.meegid.2007.10.009
Antonio Carvajal-Rodriguez (2007)
Simulating Genomes and Populations in the Mutation Space: An example with the evolution of HIV drug resistance.
arXiv:0801.0124v1
Manuel Angulo and Antonio Carvajal-Rodríguez (2007)
Evidence of recombination within human Alpha-Papillomavirus.
Virology Journal 4 :33 [PDF]
Antonio Carvajal-Rodríguez, Keith A. Crandall and
David Posada
(2007)
Recombination
favors the evolution of drug resistance in HIV-1 during antiretroviral
therapy.
Infection, Genetics and Evolution 7: 476-483. doi:10.1016/j.meegid.2007.02.001
Antonio Carvajal-Rodríguez
(2007)
The importance of bio-computational tools
for
predicting HIV drug resistance.
Recent Patents on DNA & Gene Sequences.Volume
1, Number 1:
63-68
[PDF]
Gonzalo Bello, Concepción Casado, Soledad García, Carmen Rodríguez, Jorge del
Romero, Antonio Carvajal-Rodríguez, David Posada
and Cecilio López-Galíndez
(2007)
Lack of temporal structure in the short term HIV-1 evolution within
asymptomatic naïve patients.
Virology. 362: 294-303 . doi:10.1016/j.virol.2006.11.039
Conde-Padín P, Carvajal-Rodríguez A,
Carballo M, Caballero A and Rolán-Álvarez E.
(2007)
Genetic variation
for shell traits in a direct-developing marine snail involved in a putative
sympatric ecological speciation process
Evolutionary Ecology 21: 635-650. doi:
10.1007/s10682-006-9142-8
Antonio Carvajal-Rodríguez
(2007)
FamSphere: A computer program for parental
allocation
from
known genotypic pools.
Molecular Ecology Notes. 7: 213-216 [PDF] (Uncorrected Proof)
Carvajal-Rodríguez, A.,
Guerra-Varela, J., Fernández, B., Rolán, E. and E. Rolán-Alvarez
(2006)
An
example of application of the geometric morphometric tools to the morphological
diagnosis of two sibling species in Nassarius (Mollusca, Prosobranchia).
Iberus
24 (2): 81-88 [PDF]
Antonio
Carvajal-Rodríguez and Emilio Rolán-Alvarez
(2006).
JMATING: a software for the analysis of sexual selection and sexual
isolation effects from mating frequency data.
BMC Evolutionary Biology
6:40.[Abstract][PDF]
Antonio
Carvajal-Rodríguez, Keith A. Crandall and David Posada (2006.)
Recombination Estimation under Complex Evolutionary Models with the
Coalescent Composite Likelihood Method.
Molecular
Biology and Evolution 23(4): 817-827. [Abstract]
[PDF].
Antonio Carvajal Rodríguez,
Keith A. Crandall y David Posada
(
2005
)
Caracterización y modelado
computacional de la recombinación en secuencias de ADN en el virus del SIDA
(VIH-1).
Biojournal.net 2 [PDF]
A. M. Rodríguez-Piñeiro, A. Carvajal-Rodríguez, E. Rolán-Álvarez , F. J.
Rodríguez-Berrocal, M. Martínez-Fernández and M. Páez de la Cadena
(2005)
Application of relative warp analysis to the evaluation of two-dimensional
gels in proteomics: Studying isoelectric point and relative molecular mass
variation
Journal of Proteome Research.
Volume 4 (4):
1318 - 1323.
A. Carvajal-Rodríguez,
P. Conde Padín and E Rolán
Álvarez
(2005)
Decomposing shell form into size and shape by geometric-morphometric methods
in two sympatric ecotypes of Littorina saxatilis.
Journal of Molluscan Studies 71: 313-318. [PDF]
A. Carvajal-Rodríguez, E. Rolán-Alvarez and A. Caballero
(2005)
Quantitative variation as a tool for detecting human-induced impacts on genetic diversity.
Biological Conservation. 124: 1-13 [PDF].
Carvajal-Rodríguez A, Rodríguez
MG
(2005)
MODICOS: Morphometric and Distance Computation Software for
evolutionary studies.
Online Journal of
Bioinformatics 6 : 34-40 [PDF] (Uncorrected Proof)
A. Pérez-Figueroa,
F. Cruz, A. Carvajal-Rodríguez, E. Rolán-Alvarez and A. Caballero
(2005)
The evolutionary forces maintaining a wild polymorphism of Littorina
saxatilis: model selection by computer simulations.
Journal of Evolutionary Biology 18: 191-202.
A. Carvajal-Rodríguez
(2004)
GASP: A new Genetic Algorithm (based on) Surviving Probability.
Online Journal of
Bioinformatics 5:23-31.
[PDF]
A. Carvajal
(2001)
Complementary Genes in hybrids between D. koepferae and D. buzzatii: A
Markov chain model allows to make inferences about their number and relationships.
Genes and Genetic Systems 76:345-353 [PDF]
A.
Carvajal
(1996)
Developmental disruption in hybrids between D. koepferae and D. buzzatii.
Int. Journ. of Dev. Biol. Suplement: 93s-94s [PDF].
A. Carvajal, M. Gandarela
and H Naveira
(1996)
A three-locus system of interspecific incompatibility underlies male inviability in hybrids between
Drosophila buzzatii and D.koepferae.
Genetica
98:1-19 [PDF].