# 2 runs of a neutral diploid model with 10 populations of constant and equal populatin size. Recombination hot-spots defined.

runs		diploid	constantMetapopSize
2		true		true



chromsize	numcroms	popsizeKmax	Numpops	maxgen	mutRate per haploid genome		Rec
1000		1		1000		10	2000		0.01				0.5


migration rate
0.01


migrationModel
SteppingStone1

# recombination hot spots only allowed for two allele models
# Recombination at region 0 to 100 is 0.05 but at region 500-600 is 0.01. The other regions having NO recombination
# NOTE that if recombination hot spot are defined the above general parameter Rec will be ignored

hotspots
0 100 0.05
500 600 0.01


# default sustitution model is Jukes Cantor with 2 alleles (JC2). The output format is genpop format.