# 2 runs of a diploid model with 10 populations of constant and equal populatin size. There are two positions defined as undergoing selection runs diploid constantMetapopSize 2 true true chromsize numcroms popsizeKmax Numpops maxgen mutRate per haploid genome Rec 1000 1 1000 10 2000 0.01 0.0 migration rate 0.01 migrationModel SteppingStone1 # default sustitution model is Jukes Cantor with 2 alleles (JC2). The output format is genpop format. #If the user define selective sites beginning a line with 'selposs' then: # The deletereous coefficient s is applied to any nucleotide at position 'selpos' being different of nucleotide 'selective_nuc' # However if the model have only 2 alleles (default model) the 'selective_nuc'is ignored # being the fitness concerning this mutation of 1-s #Example: With 2 alleles any mutation at positions 0 or 74 will has fitness of 0.1 or 0.5 respectively #With 4 alleles any nucleotide being different of ancestral at positions 0 or 74 will have fitness 0.1 or 0.5 respectively selpos s 0 0.9 41 0.0 74 0.5